STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3442PFAM: Protein of unknown function, Porph ging; KEGG: hypothetical protein. (248 aa)    
Predicted Functional Partners:
Slin_3443
KEGG: hypothetical protein.
 
     0.934
Slin_5097
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: ppg:PputGB1_0186 hypothetical protein.
  
     0.673
Slin_5096
Hypothetical protein; KEGG: ypi:YpsIP31758_4008 putative invasin.
  
     0.669
Slin_2248
KEGG: hypothetical protein.
  
     0.647
Slin_3228
Hypothetical protein.
  
     0.606
Slin_5230
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: avi:Avi_5260 hypothetical protein.
  
     0.602
Slin_1743
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: GF25073 gene product from transcript GF25073- RA.
  
     0.585
Slin_2543
Membrane protein-like protein; KEGG: dal:Dalk_2331 hypothetical protein.
  
     0.576
Slin_1142
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hdu:HD1096 hypothetical protein.
  
     0.562
Slin_1796
KEGG: bba:Bd1703 hypothetical protein.
  
     0.546
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.