STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3485PFAM: UbiA prenyltransferase; KEGG: met:M446_3714 bacteriochlorophyll/chlorophyll synthetase. (291 aa)    
Predicted Functional Partners:
Slin_5644
Geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P); Belongs to the GGGP/HepGP synthase family. Group II subfamily.
 
  
 0.980
Slin_5744
Dimethylallyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: sit:TM1040_3742 farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
 
 0.713
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 0.654
Slin_3022
Hypothetical protein.
  
     0.631
Slin_5231
TIGRFAM: putative membrane protein.
  
     0.627
Slin_4435
PFAM: outer membrane chaperone Skp (OmpH); KEGG: aav:Aave_1832 outer membrane chaperone Skp (OmpH).
  
     0.610
Slin_0240
PFAM: Radical SAM domain protein; KEGG: cbg:CbuG_1165 radical SAM superfamily protein.
 
    0.590
Slin_1599
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: similar to ubiquitin protein ligase E3 component n-recognin 2; K10626 E3 ubiquitin-protein ligase UBR2; Belongs to the ClpS family.
 
     0.576
Slin_3484
PFAM: glycosyl transferase group 1; KEGG: hypothetical protein.
       0.550
Slin_3587
KEGG: hypothetical protein.
  
     0.529
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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