STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3516KEGG: hypothetical protein. (431 aa)    
Predicted Functional Partners:
Slin_3514
KEGG: smt:Smal_2571 hypothetical protein.
       0.631
Slin_3515
KEGG: dia:Dtpsy_2530 hypothetical protein.
       0.631
Slin_3517
PFAM: beta-lactamase; KEGG: met:M446_5348 beta-lactamase.
     
 0.611
Slin_4460
PFAM: nucleoside recognition domain protein; KEGG: tbd:Tbd_1045 hypothetical protein.
  
  
 0.599
Slin_0002
Hypothetical protein.
  
   
 0.538
Slin_5441
Hypothetical protein; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A.
 
      0.517
Slin_4152
TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; RimK domain protein ATP-grasp; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; KEGG: csa:Csal_1114 cyanophycin synthetase; Belongs to the MurCDEF family.
  
  
 0.456
Slin_1280
PFAM: penicillin-binding protein transpeptidase; KEGG: dat:HRM2_12700 FtsW; Belongs to the SEDS family.
  
  
 0.450
Slin_0240
PFAM: Radical SAM domain protein; KEGG: cbg:CbuG_1165 radical SAM superfamily protein.
  
     0.447
Slin_5613
PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: aeh:Mlg_0602 peptidase S16, lon domain- containing protein.
 
     0.429
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.