STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3520Hypothetical protein. (258 aa)    
Predicted Functional Partners:
Slin_3521
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dds:Ddes_2085 TonB family protein.
  
   0.670
Slin_3522
TIGRFAM: TonB family protein; KEGG: mxa:MXAN_6485 ferric siderophore transporter, periplasmic energy transduction protein TonB.
  
   0.564
Slin_4457
KEGG: rpi:Rpic_1464 hypothetical protein.
  
     0.548
Slin_6538
KEGG: mxa:MXAN_6641 hypothetical protein.
  
     0.546
Slin_5605
KEGG: she:Shewmr4_3177 hypothetical protein.
  
    0.539
Slin_3519
PFAM: Saccharopine dehydrogenase; KEGG: ilo:IL1999 carboxynorspermidine dehydrogenase.
       0.527
Slin_5223
PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_1194 major facilitator transporter.
  
     0.523
Slin_3586
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; Cna B domain protein; KEGG: pfo:Pfl01_0133 von Willebrand factor, type A.
  
 
   0.521
Slin_5064
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: hypothetical protein.
  
 
   0.496
Slin_4547
SMART: regulatory protein MarR; KEGG: ppg:PputGB1_3581 MarR family transcriptional regulator.
  
     0.481
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.