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Slin_3530 protein (Spirosoma linguale) - STRING interaction network
"Slin_3530" - Hypothetical protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3530Hypothetical protein (248 aa)    
Predicted Functional Partners:
Slin_3529
Transglycosylase (80 aa)
              0.644
Slin_1116
Alanine racemase domain-containing protein (219 aa)
 
   
  0.568
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation (461 aa)
 
        0.566
Slin_1390
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (348 aa)
 
        0.566
Slin_2869
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (308 aa)
 
        0.540
Slin_4751
Cell cycle protein (373 aa)
 
      0.535
Slin_3144
Glycosyl transferase family protein (366 aa)
 
        0.531
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) (449 aa)
 
        0.530
Slin_3406
Pseudouridine synthase (244 aa)
 
        0.515
Slin_2593
Glycosyl transferase family protein (405 aa)
 
        0.489
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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