STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3588PFAM: FAD dependent oxidoreductase; KEGG: aeh:Mlg_1501 FAD dependent oxidoreductase. (354 aa)    
Predicted Functional Partners:
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.934
Slin_6575
TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: vpa:VP3022 thiamine biosynthesis protein ThiH.
    
  0.903
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.658
cmk
TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: bam:Bamb_0922 cytidylate kinase.
  
    0.590
Slin_3587
KEGG: hypothetical protein.
       0.562
Slin_2434
PFAM: aminotransferase class V; KEGG: pca:Pcar_2772 aminotransferase.
 
 
 0.478
Slin_2266
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.469
Slin_1599
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: similar to ubiquitin protein ligase E3 component n-recognin 2; K10626 E3 ubiquitin-protein ligase UBR2; Belongs to the ClpS family.
  
   
 0.462
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.