STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3608TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: cbg:CbuG_0651 cysteine desulfurase activator complex subunit SufB. (497 aa)    
Predicted Functional Partners:
Slin_0175
KEGG: noc:Noc_2489 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.999
Slin_0166
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: reh:H16_B1515 cysteine desulfurase (SufS); Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.987
Slin_0163
PFAM: Fe-S metabolism associated SufE; KEGG: fph:Fphi_1312 sulfur acceptor protein SufE.
 
 
 0.825
Slin_0162
TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: lpf:lpl0641 hypothetical protein.
 
   
 0.805
Slin_1756
PFAM: aminotransferase class V; KEGG: bja:blr1280 putative isopenicillin N epimerase.
 
 0.754
Slin_6132
PFAM: aminotransferase class V; KEGG: bja:blr1280 putative isopenicillin N epimerase.
 
 
 0.754
Slin_2438
PFAM: aminotransferase class V; KEGG: xcv:XCV0168 putative secreted protein.
 
 
 0.741
Slin_2612
PFAM: aminotransferase class V; KEGG: scl:sce8911 class-V aminotransferase.
 
 
 0.695
Slin_1785
PFAM: aminotransferase class V; KEGG: rlt:Rleg2_5012 aminotransferase class V.
 
 
 0.685
Slin_3609
Hypothetical protein.
       0.566
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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