STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3767Siderophore-interacting protein-like protein; KEGG: rme:Rmet_4199 FAD-binding 9, siderophore- interacting. (232 aa)    
Predicted Functional Partners:
Slin_3768
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: swp:swp_4627 transcriptional regulator, AraC family.
  
    0.778
Slin_0781
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: reu:Reut_A0929 bacteriocin-processing peptidase.
   
   0.588
Slin_0890
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: reu:Reut_A0929 bacteriocin-processing peptidase.
   
   0.588
Slin_1623
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bph:Bphy_3834 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter.
   
   0.588
Slin_3995
KEGG: mfa:Mfla_2223 ABC transporter related.
   
   0.588
Slin_4229
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bph:Bphy_3834 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter.
   
   0.588
Slin_4701
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: eba:ebA1666 fusion of ABC transporter-type transmembrane and ATP binding protein.
   
   0.588
Slin_3946
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
  
 0.419
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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