STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3785PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002252 putative transporter protein. (462 aa)    
Predicted Functional Partners:
Slin_3786
KEGG: slo:Shew_0422 hypothetical protein.
       0.773
Slin_4410
PFAM: secretion protein HlyD family protein; KEGG: vfi:VF_0878 EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component.
  
   
 0.609
Slin_3787
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; KEGG: bba:Bd2916 putative transcriptional regulator.
       0.575
Slin_2691
PFAM: secretion protein HlyD family protein; KEGG: pfl:PFL_4126 HlyD family secretion protein.
  
   
 0.550
Slin_3784
KEGG: tgr:Tgr7_2760 tellurite resistance protein TehB, putative.
       0.534
Slin_5288
Hypothetical protein; KEGG: gsu:GSU1480 EmrB/QacA family drug resistance transporter.
  
   
 0.510
Slin_3791
PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mll6746 pristinamycin I synthase 3.
 
  
 0.449
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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