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Slin_3787 protein (Spirosoma linguale) - STRING interaction network
"Slin_3787" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3787AraC family transcriptional regulator (287 aa)    
Predicted Functional Partners:
Slin_2771
AraC family transcriptional regulator (292 aa)
   
          0.777
Slin_3644
AraC family transcriptional regulator (306 aa)
   
          0.661
Slin_2468
AraC family transcriptional regulator (304 aa)
   
          0.647
Slin_1859
AraC family transcriptional regulator (306 aa)
   
          0.641
Slin_3785
Major facilitator superfamily protein (462 aa)
   
   
  0.638
Slin_3816
AraC family transcriptional regulator (302 aa)
   
          0.632
Slin_3786
Hypothetical protein (163 aa)
              0.627
Slin_2643
AraC family transcriptional regulator (305 aa)
   
          0.600
Slin_4017
AraC family transcriptional regulator (306 aa)
   
          0.558
Slin_2111
AraC family transcriptional regulator (304 aa)
   
          0.549
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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