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Slin_3800 protein (Spirosoma linguale) - STRING interaction network
"Slin_3800" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3800Hypothetical protein (515 aa)    
Predicted Functional Partners:
Slin_0301
Hypothetical protein (448 aa)
   
          0.671
Slin_5341
Hypothetical protein (300 aa)
   
          0.638
Slin_2382
Hypothetical protein (498 aa)
   
          0.586
Slin_4535
Hypothetical protein (125 aa)
   
          0.583
Slin_1490
Hypothetical protein (348 aa)
   
          0.576
Slin_1687
Hypothetical protein (751 aa)
   
          0.543
Slin_3163
Nucleotidyltransferase (356 aa)
   
          0.528
Slin_1902
Hypothetical protein (797 aa)
   
          0.500
Slin_4534
TonB-dependent receptor (779 aa)
   
          0.487
Slin_3257
Hypothetical protein (185 aa)
   
          0.483
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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