STRINGSTRING
Slin_3817 protein (Spirosoma linguale) - STRING interaction network
"Slin_3817" - NmrA family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3817NmrA family protein (297 aa)    
Predicted Functional Partners:
Slin_3816
AraC family transcriptional regulator (302 aa)
 
          0.855
Slin_4809
phytanoyl-CoA dioxygenase (273 aa)
   
          0.721
Slin_2781
Hypothetical protein (112 aa)
   
          0.604
Slin_2814
Hypothetical protein (1224 aa)
   
          0.592
Slin_4516
Hypothetical protein (278 aa)
   
          0.561
Slin_2782
ECF subfamily RNA polymerase sigma-24 subunit (414 aa)
   
          0.539
Slin_6346
ArsR family transcriptional regulator (89 aa)
   
          0.536
Slin_2325
AraC family transcriptional regulator (249 aa)
   
          0.511
Slin_4517
Hypothetical protein (247 aa)
   
          0.509
Slin_4561
TonB-dependent receptor (824 aa)
   
          0.501
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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