STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3860PFAM: O-antigen polymerase; KEGG: see:SNSL254_A2266 O-antigen polymerase. (494 aa)    
Predicted Functional Partners:
Slin_3859
PFAM: polysaccharide biosynthesis protein; KEGG: mpt:Mpe_A0730 putative polysaccharide transport protein.
 
  
 0.963
Slin_3858
PFAM: lipopolysaccharide biosynthesis protein; KEGG: dar:Daro_2398 lipopolysaccharide biosynthesis.
 
  
 0.957
Slin_3861
PFAM: glycosyl transferase family 2; KEGG: acp:A2cp1_1499 glycosyl transferase family 2.
 
   
 0.894
Slin_3854
Hypothetical protein; KEGG: dat:HRM2_19860 TuaH.
 
  
 0.886
Slin_4921
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mxa:MXAN_2922 sugar transferase.
  
  
 0.870
Slin_3853
PFAM: glycosyl transferase family 2; KEGG: ade:Adeh_2456 glycosyl transferase family protein.
 
   
 0.868
Slin_3862
PFAM: glycosyl transferase family 2; KEGG: cps:CPS_5020 glycosyl transferase, group 2 family protein.
 
   
 0.849
Slin_3852
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2884 glycosyl transferase family protein.
 
  
 0.806
Slin_1027
PFAM: glycosyl transferase family 2; KEGG: cps:CPS_5020 glycosyl transferase, group 2 family protein.
 
   
 0.799
Slin_3855
Acetyltransferase (isoleucine patch superfamily)- like protein; KEGG: gur:Gura_3187 hexapaptide repeat-containing transferase.
 
    0.769
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.