STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3878TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: scl:sce4580 hydrogenase expression/formation protein hypD2. (365 aa)    
Predicted Functional Partners:
Slin_3877
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dat:HRM2_11620 HypE.
 
 0.998
Slin_3879
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: scl:sce4579 hydrogenase expression/formation protein.
 
 
 0.998
Slin_3881
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: eca:ECA1234 hydrogenase nickel incorporation protein HypB.
 
  
 0.977
Slin_3880
TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: gbm:Gbem_3132 (NiFe) hydrogenase maturation protein HypF.
 
  
 0.969
Slin_3886
PFAM: nickel-dependent hydrogenase large subunit; KEGG: msl:Msil_3763 nickel-dependent hydrogenase large subunit.
 
 
 0.900
Slin_3887
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: msl:Msil_3764 NADH ubiquinone oxidoreductase 20 kDa subunit.
 
  
 0.838
hypA
Hydrogenase expression/synthesis HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.750
Slin_3885
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: msl:Msil_3760 hydrogenase maturation protease.
 
   
 0.706
Slin_3876
PFAM: NHL repeat containing protein; KEGG: bbt:BBta_0470 hypothetical protein.
 
     0.548
Slin_3875
KEGG: mpt:Mpe_A3299 putative urease accessory protein.
       0.513
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.