STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3908PFAM: Cupin 2 conserved barrel domain protein; KEGG: bgl:bglu_1g10660 cupin 2, conserved barre. (186 aa)    
Predicted Functional Partners:
Slin_3907
PFAM: GCN5-related N-acetyltransferase; KEGG: afw:Anae109_1562 GCN5-related N- acetyltransferase.
 
     0.710
Slin_4921
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mxa:MXAN_2922 sugar transferase.
  
  
 0.674
Slin_3501
PFAM: Cupin 2 conserved barrel domain protein; KEGG: ara:Arad_7246 hypothetical protein.
 
   0.613
Slin_3906
KEGG: mex:Mext_1201 hypothetical protein.
       0.597
Slin_3502
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: ccs:CCNA_03621 transcriptional regulator, AraC family.
 
 
   0.492
Slin_3905
PFAM: Endoribonuclease L-PSP; KEGG: bph:Bphy_4894 endoribonuclease L-PSP.
  
    0.425
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.