STRINGSTRING
Slin_3908 protein (Spirosoma linguale) - STRING interaction network
"Slin_3908" - Cupin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3908Cupin (186 aa)    
Predicted Functional Partners:
Slin_3907
N-acetyltransferase GCN5 (203 aa)
 
          0.793
Slin_3906
Hypothetical protein (414 aa)
              0.674
Slin_2514
Hypothetical protein (142 aa)
   
          0.579
Slin_6557
Hypothetical protein (89 aa)
   
          0.550
Slin_5906
Hypothetical protein (135 aa)
   
          0.504
Slin_3501
Cupin (184 aa)
   
          0.488
Slin_1976
Conjugative relaxase domain-containing protein (919 aa)
   
          0.476
Slin_3905
Endoribonuclease L-PSP (164 aa)
              0.466
Slin_5108
Hypothetical protein (387 aa)
   
          0.411
Slin_4308
Fibronectin type III domain-containing protein (1377 aa)
   
          0.410
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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