STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3918PFAM: Amidase; KEGG: dol:Dole_2535 amidase; Belongs to the amidase family. (519 aa)    
Predicted Functional Partners:
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 0.973
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
 
 
 0.931
Slin_1649
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpt:Rpal_4645 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
 
 0.905
Slin_1742
PFAM: Aldehyde Dehydrogenase; KEGG: pol:Bpro_5303 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.903
Slin_3069
PFAM: Aldehyde Dehydrogenase; KEGG: dat:HRM2_38600 NAD-dependent aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
    
 0.903
Slin_1852
PFAM: flavin-containing monooxygenase FMO; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mlo:mll7934 dimethylaniline monooxygenase.
    
 0.902
Slin_6320
KEGG: YALI0B21846p; K00457 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
  0.814
Slin_4025
PFAM: protein of unknown function DUF453; KEGG: csa:Csal_0328 methylitaconate delta2-delta3- isomerase.
     
  0.800
Slin_3919
PFAM: glycosidase PH1107-related; Glycosyl hydrolase family 32 domain protein; KEGG: cak:Caul_5274 glycosidase PH1107-related.
       0.618
glnS
TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; KEGG: dvl:Dvul_0417 glutaminyl-tRNA synthetase.
  
 
 0.597
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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