STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3952KEGG: hypothetical protein. (327 aa)    
Predicted Functional Partners:
Slin_3953
KEGG: mpt:Mpe_A1594 glucose dehydrogenase; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; cytochrome c class I; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
 
  
 0.787
Slin_4692
KEGG: rle:RL3795 hypothetical protein.
 
  
 0.740
Slin_3954
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: bcs:BCAN_B0959 2-keto-3-deoxy-galactonokinase.
 
     0.700
Slin_4026
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mll1734 hypothetical protein.
  
     0.697
Slin_0417
PFAM: Protein of unknown function DUF2261, transmembrane; KEGG: son:SO_3504 hypothetical protein.
  
     0.640
Slin_3951
PFAM: RagB/SusD domain protein.
 
     0.598
Slin_2825
PFAM: protein of unknown function LppY and LpqO; KEGG: mxa:MXAN_1770 LppY/LpqO family protein.
  
     0.586
Slin_3948
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sea:SeAg_B1541 mandelate racemase/muconate lactonizing enzyme, C-domain protein.
 
     0.565
Slin_3945
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mlo:mlr2330 hypothetical protein.
 
     0.555
Slin_3955
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: scl:sce5154 KDPG and KHG aldolase.
 
   
 0.535
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.