STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3966Glucose/sorbosone dehydrogenase-like protein; KEGG: noc:Noc_2145 L-sorbosone dehydrogenase. (601 aa)    
Predicted Functional Partners:
Slin_3562
KEGG: mxa:MXAN_5541 cytochrome c oxidase, cbb3- type, subunit I/II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.984
Slin_3965
PFAM: amidohydrolase; KEGG: azc:AZC_2016 dihydroorotase.
 
     0.815
Slin_3968
KEGG: ara:Arad_7947 L-seryl-tRNA(ser) selenium transferase protein.
 
     0.794
Slin_3967
PFAM: Endoribonuclease L-PSP; KEGG: hhe:HH1693 hypothetical protein.
 
    0.793
Slin_3969
PFAM: amidohydrolase; KEGG: azc:AZC_2016 dihydroorotase.
 
     0.768
Slin_3964
KEGG: oan:Oant_2990 pyridoxal phosphate-dependent enzyme, putative.
 
     0.756
Slin_6067
Demethylmenaquinone methyltransferase-like protein; KEGG: azc:AZC_2642 hypothetical protein.
  
     0.655
Slin_3963
KEGG: mxa:MXAN_2624 putative lipoprotein.
 
     0.648
Slin_2536
Hypothetical protein; KEGG: pha:PSHAb0414 putative membrane associated hydrolase.
  
     0.599
Slin_1132
PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; cytochrome c class I; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: bam:Bamb_5932 quinate/shikimate dehydrogenase, putative.
 
  
 0.579
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.