STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3993PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1081 aa)    
Predicted Functional Partners:
Slin_3992
Hypothetical protein.
 
 
   0.940
Slin_4237
Hypothetical protein.
 
 
   0.818
Slin_6040
KEGG: hypothetical protein.
 
   0.816
Slin_0095
KEGG: hypothetical protein.
 
 
   0.780
Slin_4800
KEGG: hypothetical protein.
 
   0.673
Slin_3990
PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: ccs:CCNA_01036 hypothetical protein.
 
     0.671
Slin_0202
KEGG: hypothetical protein.
 
 
   0.670
Slin_1168
KEGG: hypothetical protein.
 
   0.669
Slin_0205
KEGG: hypothetical protein.
 
   0.662
Slin_3991
Hypothetical protein.
       0.657
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.