STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4002PFAM: oxidoreductase domain protein; KEGG: rlt:Rleg2_0984 oxidoreductase domain protein. (485 aa)    
Predicted Functional Partners:
Slin_1925
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: ecy:ECSE_1367 putative dehydrogenase.
  
     0.554
Slin_5750
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: scl:sce9140 putative oxidoreductase.
 
     0.525
Slin_4003
PFAM: Protein of unknown function DUF1810; KEGG: mrd:Mrad2831_3610 hypothetical protein.
       0.487
Slin_5725
PFAM: protein of unknown function DUF1080; KEGG: pnu:Pnuc_1112 hypothetical protein.
 
     0.469
Slin_5797
PFAM: RagB/SusD domain protein.
  
     0.446
Slin_4651
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
 
    0.440
Slin_0438
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
 
    0.435
Slin_3462
PFAM: protein of unknown function DUF1080; KEGG: swd:Swoo_0366 hypothetical protein.
 
    0.421
Slin_5798
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
    0.415
Slin_0439
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ppr:PBPRB0461 myo-inositol catabolismprotein IolB.
  
    0.401
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.