STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4014PFAM: PilT protein domain protein; KEGG: rpd:RPD_2669 PilT protein-like. (137 aa)    
Predicted Functional Partners:
Slin_4015
Hypothetical protein.
       0.773
Slin_4956
PFAM: PilT protein domain protein; KEGG: tmz:Tmz1t_0047 PilT protein domain protein.
  
     0.645
Slin_3651
PFAM: PilT protein domain protein; KEGG: mpo:Mpop_3315 PilT protein domain protein.
  
     0.576
Slin_4573
PFAM: PilT protein domain protein; KEGG: mpo:Mpop_3315 PilT protein domain protein.
  
     0.576
Slin_4968
PFAM: protein of unknown function DUF820; KEGG: lch:Lcho_2361 hypothetical protein.
  
     0.521
Slin_2565
PFAM: protein of unknown function DUF820; KEGG: scl:sce0505 hypothetical protein.
  
     0.518
Slin_5232
KEGG: dal:Dalk_4292 putative transcription regulator with HTH domain.
  
     0.514
Slin_0741
PFAM: protein of unknown function DUF820; KEGG: scl:sce0505 hypothetical protein.
  
     0.482
Slin_0491
KEGG: psa:PST_3436 hypothetical protein.
  
     0.479
Slin_2499
KEGG: gme:Gmet_3001 XRE family plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.458
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.