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Slin_4023 protein (Spirosoma linguale) - STRING interaction network
"Slin_4023" - Dimethylmenaquinone methyltransferase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4023Dimethylmenaquinone methyltransferase (198 aa)    
Predicted Functional Partners:
Slin_4024
6-phosphogluconate dehydrogenase (263 aa)
          0.991
Slin_4022
LmbE family protein (238 aa)
 
   
    0.990
Slin_4025
Hypothetical protein (367 aa)
 
          0.970
Slin_5914
Acetolactate synthase large subunit (588 aa)
       
    0.903
Slin_5913
Acetolactate synthase small subunit (177 aa)
         
    0.900
Slin_4021
Catechol 2,3-dioxygenase (319 aa)
 
     
  0.838
Slin_1548
Catechol 2,3-dioxygenase (330 aa)
 
     
  0.641
Slin_4026
Xylose isomerase (311 aa)
              0.612
Slin_5691
DEAD/DEAH box helicase (475 aa)
       
 
  0.586
Slin_3331
DEAD/DEAH box helicase (441 aa)
       
 
  0.586
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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