STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4023PFAM: Dimethylmenaquinone methyltransferase; KEGG: reu:Reut_B5772 dimethylmenaquinone methyltransferase. (198 aa)    
Predicted Functional Partners:
Slin_4022
PFAM: LmbE family protein; KEGG: ppf:Pput_1362 LmbE family protein.
  
 0.993
Slin_4024
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: spe:Spro_2089 phosphogluconate dehydrogenase, NAD-binding, putative-like protein.
     0.993
Slin_4025
PFAM: protein of unknown function DUF453; KEGG: csa:Csal_0328 methylitaconate delta2-delta3- isomerase.
 
   
 0.952
Slin_5913
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; Acetolactate synthase, small subunit-like; KEGG: afw:Anae109_1878 acetolactate synthase, small subunit.
     
  0.900
Slin_5914
TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: ftn:FTN_1042 acetolactate synthase large subunit.
     
  0.900
Slin_4021
Catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr3819 metapyrocatechase.
 
   
 0.846
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
      0.728
Slin_1548
Catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr3819 metapyrocatechase.
 
   
 0.681
Slin_1557
PFAM: amidohydrolase 2; KEGG: dac:Daci_4537 amidohydrolase 2.
 
   
 0.640
Slin_4313
KEGG: hypothetical protein; K00031 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase.
      0.638
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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