STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4039PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: xac:XAC4250 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (811 aa)    
Predicted Functional Partners:
Slin_0624
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sde:Sde_1285 beta-galactosidase/beta- glucuronidase-like; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.928
Slin_1235
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.921
Slin_2977
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.921
Slin_1719
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: cja:CJA_0532 beta-galactosidase, putative, bgl2B; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.918
Slin_1907
PFAM: glycoside hydrolase clan GH-D; KEGG: melibiase, putative.
  
 
 0.910
Slin_2631
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: kpe:KPK_5057 glycosyl hydrolase, family 42.
   
 0.910
Slin_3046
PFAM: Aldose 1-epimerase; KEGG: vsp:VS_II1385 galactose mutarotase and related enzymes.
  
 
 0.907
Slin_2261
Glucan endo-1,6-beta-glucosidase; PFAM: glycoside hydrolase family 30; KEGG: sde:Sde_2994 glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
  
 
 0.904
Slin_2562
PFAM: ROK family protein; KEGG: ara:Arad_9637 transcriptional regulator protein.
     
 0.902
Slin_2646
PFAM: ROK family protein; KEGG: ank:AnaeK_0168 ROK family protein.
     
 0.902
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.