STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4049PFAM: histidine triad (HIT) protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pna:Pnap_4872 histidine triad (HIT) protein. (289 aa)    
Predicted Functional Partners:
Slin_4047
KEGG: spl:Spea_2304 hypothetical protein.
 
     0.938
Slin_5380
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
    
 0.914
Slin_1693
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.903
Slin_1696
KEGG: afw:Anae109_1644 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase.
     
 0.903
Slin_4046
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pna:Pnap_4585 phosphoadenosine phosphosulfate reductase.
     
 0.781
kptA
Phosphotransferase KptA/Tpt1; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
  
    0.776
Slin_0238
PFAM: XisH protein; KEGG: neu:NE1909 diguanylate cyclase/phosphodiesterase.
  
     0.658
Slin_1545
PFAM: XisH protein.
  
     0.627
Slin_0239
PFAM: XisI protein.
  
     0.615
Slin_1546
PFAM: XisI protein.
  
     0.580
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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