STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4080PFAM: glycosyl transferase family 2; KEGG: hch:HCH_05591 N-glycosyltransferase PgaC. (401 aa)    
Predicted Functional Partners:
Slin_0248
KEGG: wsu:WS2183 hypothetical protein.
 
     0.756
Slin_5644
Geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P); Belongs to the GGGP/HepGP synthase family. Group II subfamily.
  
     0.749
Slin_5852
Hypothetical protein.
  
     0.738
Slin_5927
Hypothetical protein.
  
     0.645
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.595
Slin_2237
PFAM: polysaccharide deacetylase; KEGG: cps:CPS_5017 polysaccharide deacetylase family protein.
 
  
 0.578
tgt
Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]
   
 
 0.575
Slin_2677
KEGG: pol:Bpro_2327 hypothetical protein.
  
     0.544
Slin_0807
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pfo:Pfl01_5133 PpiC-type peptidyl-prolyl cis- trans isomerase.
  
    0.542
Slin_2829
PFAM: TonB-dependent receptor plug; KEGG: hypothetical protein.
  
     0.517
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.