STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4097PFAM: OmpA/MotB domain protein; KEGG: neu:NE1025 outer membrane protein. (285 aa)    
Predicted Functional Partners:
Slin_4096
Hypothetical protein.
 
     0.803
Slin_4095
Hypothetical protein.
       0.773
Slin_5203
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
 
 
 0.767
Slin_4006
PFAM: OmpA/MotB domain protein; KEGG: rpi:Rpic_2593 OmpA/MotB domain protein.
  
     0.728
Slin_4945
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; Tetratricopeptide TPR_2 repeat protein; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
  
     0.668
Slin_3584
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
  
     0.656
Slin_4098
Hypothetical protein.
       0.655
Slin_1311
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
  
     0.639
Slin_4094
Hypothetical protein.
       0.586
Slin_4500
PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM.
 
 
 
 0.521
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.