STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4110SMART: Tetratricopeptide repeat; KEGG: hch:HCH_03531 TPR repeat-containing protein. (418 aa)    
Predicted Functional Partners:
Slin_4109
TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: dar:Daro_3609 rhs element Vgr protein.
       0.689
Slin_4111
KEGG: hch:HCH_03533 rhs family protein.
  
    0.594
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.562
Slin_5836
PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
   
 0.562
Slin_0458
PFAM: Ankyrin; SMART: Ankyrin; KEGG: pat:Patl_1108 ankyrin.
   
 0.531
Slin_4108
PFAM: GPW/gp25 family protein.
       0.449
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.435
Slin_1459
ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity.
   
 0.418
Slin_5709
KEGG: rsh:Rsph17029_3728 HSP90 family molecular chaperone-like protein.
   
 0.418
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.