STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4114PFAM: PAAR repeat-containing protein; KEGG: cja:CJA_3676 PaaR motif family. (96 aa)    
Predicted Functional Partners:
Slin_4109
TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: dar:Daro_3609 rhs element Vgr protein.
 
   
 0.826
Slin_4120
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ppd:Ppro_0362 ATPase central domain- containing protein.
 
     0.819
Slin_4112
Hypothetical protein.
  
  
 0.722
Slin_4113
Hypothetical protein.
       0.624
Slin_4115
Hypothetical protein; KEGG: Muc19; mucin 19.
       0.450
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
 
 0.443
Slin_5669
KEGG: mxa:MXAN_5553 hypothetical protein.
    
 
 0.443
Slin_4116
Hypothetical protein.
  
  
 0.431
Slin_4111
KEGG: hch:HCH_03533 rhs family protein.
 
   
 0.416
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.