STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4145PFAM: Carboxylesterase type B; KEGG: asu:Asuc_2093 carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. (542 aa)    
Predicted Functional Partners:
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.634
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.613
Slin_4144
PFAM: putative esterase; KEGG: bpy:Bphyt_5901 putative esterase.
   
 
 0.594
Slin_1258
PFAM: glycoside hydrolase family 3 domain protein; KEGG: tau:Tola_1809 glycoside hydrolase family 3 domain protein.
 
     0.556
Slin_4147
PFAM: protein of unknown function DUF1446; KEGG: bra:BRADO1397 hypothetical protein.
  
  
 0.545
Slin_4148
KEGG: bbt:BBta_2933 hypothetical protein.
       0.535
Slin_4146
TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; KEGG: mmw:Mmwyl1_1226 CitMHS family citrate/H+ symporter.
       0.532
Slin_2687
PFAM: glycoside hydrolase family 3 domain protein; KEGG: pin:Ping_0139 glycoside hydrolase family 3 protein.
  
     0.499
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
 0.480
Slin_4159
PFAM: FRG domain protein; KEGG: ppd:Ppro_2922 hypothetical protein.
   
 0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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