STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4264TIGRFAM: pseudaminic acid CMP-transferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: cff:CFF8240_1549 acylneuraminate cytidylyltransferase. (233 aa)    
Predicted Functional Partners:
Slin_4265
TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG; KEGG: rhi:NGR_b09480 RkpO, polysaccharide biosynthesis protein.
   
 0.973
Slin_4263
TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4- aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bph:Bphy_3010 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.936
Slin_4269
Pseudaminic acid synthase; KEGG: bph:Bphy_3008 N-acylneuraminate-9-phosphate synthase; TIGRFAM: pseudaminic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein.
 
  
 0.917
Slin_4262
TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: pca:Pcar_1142 nucleoside-diphosphate sugar epimerase.
 
  
 0.905
Slin_4266
TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase; PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_01523 acetyltransferase FlmH.
 
   
 0.888
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
      0.576
Slin_4071
KEGG: tbd:Tbd_0286 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.511
Slin_4267
SMART: LamG domain protein jellyroll fold domain protein; KEGG: gur:Gura_1112 LamG domain-containing protein.
       0.506
Slin_4260
KEGG: gbm:Gbem_3737 hypothetical protein.
       0.435
Slin_4268
Hypothetical protein; KEGG: gur:Gura_1112 LamG domain-containing protein.
       0.432
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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