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Slin_4264 protein (Spirosoma linguale) - STRING interaction network
"Slin_4264" - Pseudaminic acid CMP-transferase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4264Pseudaminic acid CMP-transferase (233 aa)    
Predicted Functional Partners:
Slin_4269
Pseudaminic acid synthase (351 aa)
 
 
  0.992
Slin_4265
Pseudaminic acid biosynthesis-associated protein PseG (344 aa)
 
   
  0.973
Slin_4263
UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase (390 aa)
 
   
  0.951
Slin_4262
UDP-N-acetylglucosamine 4,6-dehydratase (338 aa)
 
     
  0.933
Slin_4266
Pseudaminic acid biosynthesis N-acetyl transferase (180 aa)
 
     
  0.903
Slin_4267
LamG domain-containing protein (236 aa)
              0.570
Slin_5889
Phosphatase KdsC (170 aa)
 
      0.524
Slin_4071
UDP-N-acetylglucosamine 2-epimerase (368 aa)
   
   
  0.494
Slin_4268
Hypothetical protein (313 aa)
              0.489
Slin_6419
NAD-dependent epimerase/dehydratase (322 aa)
   
   
  0.484
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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