STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4268Hypothetical protein; KEGG: gur:Gura_1112 LamG domain-containing protein. (313 aa)    
Predicted Functional Partners:
Slin_0804
KEGG: spe:Spro_0245 protein tyrosine/serine phosphatase.
   
 
 0.892
Slin_4908
KEGG: rpc:RPC_2416 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
 
 0.825
Slin_5945
TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: AGAP012727-PA.
    
 
 0.825
Slin_5026
PFAM: sulphate transporter; Xanthine/uracil/vitamin C permease; KEGG: nmu:Nmul_A0710 sulphate transporter.
    
   0.760
Slin_5836
PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
 
 
 0.729
Slin_4267
SMART: LamG domain protein jellyroll fold domain protein; KEGG: gur:Gura_1112 LamG domain-containing protein.
 
    
0.722
Slin_5613
PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: aeh:Mlg_0602 peptidase S16, lon domain- containing protein.
    
  0.587
Slin_2973
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: tgr:Tgr7_2548 FHA-domain containing protein.
   
  0.586
Slin_1279
Hypothetical protein.
   
  0.579
Slin_2971
Hypothetical protein.
   
  0.579
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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