STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Slin_4269Pseudaminic acid synthase; KEGG: bph:Bphy_3008 N-acylneuraminate-9-phosphate synthase; TIGRFAM: pseudaminic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein. (351 aa)    
Predicted Functional Partners:
Slin_4265
TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG; KEGG: rhi:NGR_b09480 RkpO, polysaccharide biosynthesis protein.
 
  
 0.942
Slin_4264
TIGRFAM: pseudaminic acid CMP-transferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: cff:CFF8240_1549 acylneuraminate cytidylyltransferase.
 
  
 0.917
Slin_4263
TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4- aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bph:Bphy_3010 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.878
Slin_4262
TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: pca:Pcar_1142 nucleoside-diphosphate sugar epimerase.
 
  
 0.874
Slin_4266
TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase; PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_01523 acetyltransferase FlmH.
 
  
 0.810
Slin_5840
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: gur:Gura_3273 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.583
Slin_4270
Hypothetical protein; KEGG: mmw:Mmwyl1_0834 polysaccharide biosynthesis protein.
  
  
 0.551
Slin_4268
Hypothetical protein; KEGG: gur:Gura_1112 LamG domain-containing protein.
       0.528
Slin_4071
KEGG: tbd:Tbd_0286 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.466
Slin_4921
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mxa:MXAN_2922 sugar transferase.
  
  
 0.455
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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