STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4376Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; KEGG: bbr:BB1138 GntR family transcriptional regulator. (266 aa)    
Predicted Functional Partners:
Slin_4382
L-fucose isomerase-like protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.615
Slin_0508
Transcriptional regulator, AraC family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: pen:PSEEN1994 transcriptional activator MltR.
  
  
 0.586
Slin_2506
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: sse:Ssed_2097 hypothetical protein.
  
  
 0.586
Slin_3787
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; KEGG: bba:Bd2916 putative transcriptional regulator.
  
  
 0.586
Slin_4971
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: csa:Csal_2607 transcriptional regulator, AraC family.
  
  
 0.586
Slin_2932
KEGG: vha:VIBHAR_01335 N-acetylglucosamine-6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
 
  
 0.558
Slin_6003
TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: sfu:Sfum_3306 nicotinamide mononucleotide adenylyltransferase.
   
  
 0.534
Slin_5436
KEGG: sat:SYN_01420 putative cytoplasmic protein.
   
    0.531
Slin_6212
KEGG: vei:Veis_1395 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
 
  
 0.528
Slin_4375
PFAM: putative esterase; KEGG: ccs:CCNA_00345 IroE protein.
     
 0.505
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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