STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4412PFAM: outer membrane efflux protein; KEGG: cko:CKO_04427 outer membrane channel protein. (444 aa)    
Predicted Functional Partners:
Slin_2362
PFAM: outer membrane efflux protein; KEGG: sgl:SG0266 outer membrane channel protein.
  
  
 
0.926
Slin_1203
PFAM: outer membrane efflux protein; KEGG: dal:Dalk_4861 outer membrane efflux protein.
  
  
  0.920
Slin_2692
PFAM: outer membrane efflux protein; KEGG: sat:SYN_02462 type I secretion outer membrane protein.
  
  
 
0.912
Slin_2351
KEGG: sat:SYN_01010 type I secretion outer membrane protein.
     
  0.900
Slin_2617
PFAM: outer membrane efflux protein; KEGG: mxa:MXAN_6176 outer membrane efflux protein.
     
  0.900
Slin_3233
PFAM: outer membrane efflux protein; KEGG: afr:AFE_3265 outer membrane efflux protein.
     
  0.900
Slin_3997
KEGG: lpc:LPC_0302 multidrug efflux protein, outer membrane component.
     
  0.900
Slin_6010
PFAM: outer membrane efflux protein; KEGG: dal:Dalk_5050 outer membrane efflux protein.
     
  0.900
Slin_4410
PFAM: secretion protein HlyD family protein; KEGG: vfi:VF_0878 EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component.
 
   0.861
Slin_4411
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gur:Gura_2706 EmrB/QacA family drug resistance transporter.
 
    0.727
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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