STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4487Thioredoxin-related protein-like protein; KEGG: dat:HRM2_42220 putative thioredoxin. (196 aa)    
Predicted Functional Partners:
Slin_4488
PFAM: protein of unknown function DUF752; KEGG: swd:Swoo_4256 hypothetical protein.
 
     0.558
Slin_4486
Endothelin-converting enzyme 1; PFAM: peptidase M13; Peptidase M13, neprilysin- like; KEGG: spl:Spea_3177 endothelin-converting protein 1.
       0.482
Slin_5618
KEGG: hypothetical protein.
  
     0.424
Slin_1307
TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: scl:sce3596 hypothetical protein.
  
     0.418
Slin_1383
KEGG: gur:Gura_0126 hypothetical protein.
  
     0.418
Slin_3000
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: acp:A2cp1_2449 phosphodiesterase, MJ0936 family.
  
     0.417
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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