STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4516KEGG: hypothetical protein. (278 aa)    
Predicted Functional Partners:
Slin_4517
KEGG: bur:Bcep18194_C6576 hypothetical protein.
 
    
0.813
Slin_5555
KEGG: hypothetical protein.
 
     0.783
Slin_3072
PFAM: Anti-sigma-K factor RskA; KEGG: reu:Reut_A0696 transmembrane protein.
 
     0.512
Slin_3155
PFAM: Protein of unknown function DUF2183; KEGG: mxa:MXAN_0055 hypothetical protein.
  
     0.464
Slin_4518
KEGG: ank:AnaeK_4339 hypothetical protein.
       0.455
Slin_6133
PFAM: peptidase M28; KEGG: ccs:CCNA_00933 hypothetical protein.
  
     0.429
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.