STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4530PFAM: Peptidase M75, Imelysin; KEGG: swd:Swoo_0791 putative lipoprotein. (384 aa)    
Predicted Functional Partners:
Slin_4531
PFAM: Vitamin K-dependent gamma-carboxylase; SMART: HTTM domain protein; KEGG: mxa:MXAN_5026 vitamin K-dependent gamma- carboxylase-related protein.
 
     0.936
Slin_4529
Hypothetical protein.
 
   
 0.909
Slin_4532
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bba:Bd2648 outer membrane iron(III) dicitrate receptor.
 
     0.871
Slin_4665
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_00138 TonB-dependent receptor.
 
     0.742
Slin_6245
PFAM: Phytanoyl-CoA dioxygenase; KEGG: bch:Bcen2424_2379 phytanoyl-CoA dioxygenase.
  
     0.532
Slin_6378
PFAM: TonB-dependent receptor plug; KEGG: ccs:CCNA_00858 TonB-dependent receptor.
  
     0.518
Slin_1939
KEGG: hypothetical protein LOC100213976.
  
     0.434
Slin_0226
KEGG: eba:ebA362 phosphodiesterase/alkaline phosphatase D.
  
     0.432
Slin_2916
KEGG: lch:Lcho_3567 hypothetical protein.
  
     0.415
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.