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Slin_4546 protein (Spirosoma linguale) - STRING interaction network
"Slin_4546" - ABC transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4546ABC transporter (238 aa)    
Predicted Functional Partners:
Slin_4653
Hypothetical protein (413 aa)
  0.992
Slin_0794
Hypothetical protein (412 aa)
  0.992
Slin_2349
Hypothetical protein (415 aa)
  0.987
Slin_1762
ABC transporter (218 aa)
   
   
    0.980
Slin_5020
Hypothetical protein (418 aa)
   
  0.975
Slin_4545
Secretion protein HlyD (335 aa)
 
 
  0.961
Slin_0799
ABC transporter (353 aa)
   
0.951
Slin_1095
ABC transporter (587 aa)
 
  0.951
Slin_1564
ABC transporter (259 aa)
 
 
 
0.949
Slin_2342
ABC transporter (274 aa)
   
   
 
0.948
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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