STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4546PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cco:CCC13826_1257 macrolide export ATP- binding/permease protein MacB. (238 aa)    
Predicted Functional Partners:
Slin_0794
PFAM: protein of unknown function DUF214; KEGG: mxa:MXAN_4173 putative ABC transporter, permease protein.
   0.961
Slin_4653
PFAM: protein of unknown function DUF214; KEGG: mxa:MXAN_0108 putative ABC transporter, permease protein.
   0.958
Slin_4639
PFAM: protein of unknown function DUF214; KEGG: sde:Sde_0330 acetylornithine deacetylase ArgE.
 
 
 0.911
Slin_4544
PFAM: protein of unknown function DUF214; KEGG: dvl:Dvul_3083 hypothetical protein.
 
  
 0.906
Slin_0925
PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein.
  
 
 0.893
Slin_0927
PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein.
  
 
 0.893
Slin_4591
PFAM: protein of unknown function DUF214; KEGG: cps:CPS_3505 ABC transporter, permease protein.
  
 
 0.893
Slin_4594
PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein.
  
 
 0.893
Slin_4595
PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein.
  
 
 0.893
Slin_4614
PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein.
  
 
 0.893
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.