STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4591PFAM: protein of unknown function DUF214; KEGG: cps:CPS_3505 ABC transporter, permease protein. (795 aa)    
Predicted Functional Partners:
Slin_4589
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4701 ABC transporter, ATP-binding protein.
 
 
 0.971
Slin_1201
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_7144 ABC transporter, ATP-binding protein.
 
 
 0.950
Slin_2350
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4701 ABC transporter, ATP-binding protein.
 
 
 0.926
Slin_5121
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_4199 putative macrolide efflux ABC transporter, ATP-binding protein.
 
 
 0.906
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.893
lolD-2
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.893
Slin_4546
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cco:CCC13826_1257 macrolide export ATP- binding/permease protein MacB.
  
 
 0.893
Slin_4817
Sigma 54 interacting domain protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1200 ABC transporter related.
  
 
 0.893
Slin_6499
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmy:Pmen_2559 ABC transporter related.
  
 
 0.893
Slin_4588
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_0328 ABC transporter permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.844
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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