STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4630PFAM: protein of unknown function DUF214; KEGG: sde:Sde_0330 acetylornithine deacetylase ArgE. (816 aa)    
Predicted Functional Partners:
Slin_4588
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_0328 ABC transporter permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.832
Slin_4589
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4701 ABC transporter, ATP-binding protein.
 
   0.820
Slin_4582
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: cps:CPS_4705 sensory box sensor histidine kinase.
 
     0.763
Slin_1201
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_7144 ABC transporter, ATP-binding protein.
 
   0.692
Slin_2350
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4701 ABC transporter, ATP-binding protein.
 
   0.511
Slin_2352
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: shm:Shewmr7_3161 efflux transporter, RND family, MFP subunit.
  
   0.475
Slin_4631
Hypothetical protein.
       0.441
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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