STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4673PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sde:Sde_1709 hypothetical protein. (341 aa)    
Predicted Functional Partners:
Slin_4672
PFAM: PKD domain containing protein; cytochrome c class I; SMART: PKD domain containing protein; KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator.
       0.718
Slin_4674
Hypothetical protein; KEGG: cja:CJA_2657 carbohydrate binding protein, putative, cbp32B.
       0.528
Slin_4671
PFAM: NUDIX hydrolase; KEGG: cja:CJA_3063 NUDIX hydrolase.
  
    0.525
Slin_6435
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2151 hypothetical protein.
  
     0.489
Slin_2898
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2151 hypothetical protein.
  
     0.487
Slin_1351
PFAM: putative esterase; KEGG: scl:sce0967 hypothetical protein.
  
     0.448
Slin_5797
PFAM: RagB/SusD domain protein.
  
     0.444
Slin_6458
PFAM: oxidoreductase domain protein; KEGG: vei:Veis_1396 oxidoreductase domain- containing protein.
 
    0.436
Slin_6214
PFAM: oxidoreductase domain protein; KEGG: bcs:BCAN_A2095 hypothetical protein.
  
    0.430
Slin_3415
PFAM: oxidoreductase domain protein; KEGG: kpe:KPK_4084 oxidoreductase, NAD binding.
 
    0.425
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.