STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4778PFAM: lipolytic protein G-D-S-L family; KEGG: pat:Patl_0828 lipolytic enzyme, G-D-S-L. (417 aa)    
Predicted Functional Partners:
Slin_4779
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: psp:PSPPH_1743 L-sorbosone dehydrogenase.
     0.980
Slin_3385
KEGG: pzu:PHZ_c2443 hypothetical protein.
  
     0.754
Slin_0602
KEGG: cak:Caul_0966 hypothetical protein.
  
     0.743
Slin_0957
PFAM: protein of unknown function DUF1549; KEGG: pat:Patl_0817 hypothetical protein.
  
     0.711
Slin_6338
TIGRFAM: membrane-bound dehydrogenase domain protein; PFAM: blue (type 1) copper domain protein; KEGG: pna:Pnap_1326 nitrite reductase, copper- containing.
 
     0.707
Slin_0956
PFAM: RagB/SusD domain protein.
  
 
   0.696
Slin_6276
Hypothetical protein; KEGG: sme:SM_b21056 esterase.
  
     0.694
Slin_5004
Hypothetical protein.
  
     0.669
Slin_5487
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: bid:Bind_0907 cytochrome c class I.
 
     0.646
Slin_0604
PFAM: oxidoreductase domain protein; KEGG: ade:Adeh_1063 oxidoreductase-like protein.
  
     0.625
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.