STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaC-2PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase. (477 aa)    
Predicted Functional Partners:
Slin_1056
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: tau:Tola_3026 mannitol dehydrogenase domain protein.
 
 
 0.979
Slin_1247
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: yen:YE3707 altronate oxidoreductase.
 
 
 0.977
Slin_2419
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sit:TM1040_3871 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.921
uxaC
PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase.
  
  
 
0.901
Slin_4183
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: zgc:172049.
     
  0.900
Slin_3895
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.898
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.898
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.896
Slin_1236
PFAM: class II aldolase/adducin family protein; KEGG: scl:sce3309 L-ribulose-5-phosphate 4- epimerase.
     
 0.828
Slin_1237
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cak:Caul_3612 alpha-N-arabinofuranosidase.
     
 0.828
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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