STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4787PFAM: Pectinesterase; KEGG: xcb:XC_0125 pectin methylesterase-like protein. (337 aa)    
Predicted Functional Partners:
Slin_1242
PFAM: lipolytic protein G-D-S-L family; KEGG: sde:Sde_3094 GntR family transcriptional regulator.
   
 0.979
Slin_1241
KEGG: cja:CJA_3115 putative lipoprotein.
   
 0.973
Slin_4788
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_3601 beta-xylosidase/alpha-L- arabinfuranosidase, putative, gly43I; Belongs to the glycosyl hydrolase 43 family.
 
     0.949
Slin_1231
Lysophospholipase L1 and related esterase-like protein; KEGG: hypothetical protein.
   
 0.916
Slin_1253
PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family.
   
 0.908
Slin_4784
PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family.
   
 0.894
Slin_1024
PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein.
    0.877
Slin_5374
PFAM: glycoside hydrolase family 28; KEGG: Os09g0439400; hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
   
 0.795
Slin_0456
PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein.
     0.726
Slin_6431
PFAM: glycoside hydrolase family 43; KEGG: glycosyl hydrolase family protein 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.638
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.