STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4789PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rle:RL3451 putative short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (293 aa)    
Predicted Functional Partners:
Slin_0197
PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: similar to LOC407663 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.593
Slin_4790
SMART: Helix-turn-helix, AraC domain; KEGG: cvi:CV_0679 transcriptional regulatory protein.
 
     0.577
Slin_4787
PFAM: Pectinesterase; KEGG: xcb:XC_0125 pectin methylesterase-like protein.
       0.543
Slin_4788
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_3601 beta-xylosidase/alpha-L- arabinfuranosidase, putative, gly43I; Belongs to the glycosyl hydrolase 43 family.
       0.543
Slin_6559
PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rle:RL1254 hypothetical protein.
  
     0.432
Slin_5818
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_1352 short-chain dehydrogenase/reductase SDR.
  
 
   0.426
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.