STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4799PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: rfe:RF_0310 TPR repeat-containing protein. (563 aa)    
Predicted Functional Partners:
Slin_5627
Anthranilate phosphoribosyltransferase-like protein; KEGG: similar to phosphoribosylanthranilate transferase.
 
     0.753
Slin_5088
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pca:Pcar_1506 biopolymer transport protein.
 
 
   0.739
Slin_2547
Hypothetical protein.
  
   0.735
Slin_1362
Hypothetical protein.
  
 
   0.731
Slin_5092
KEGG: ade:Adeh_4006 ABC transporter, periplasmic phosphate binding protein.
 
   
 0.717
Slin_0554
PFAM: RagB/SusD domain protein.
 
    0.712
Slin_4648
PFAM: Biopolymer transport protein ExbD/TolR.
 
 
   0.710
Slin_0499
KEGG: scl:sce3892 outer membrane protein.
  
 
   0.709
Slin_5089
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: abu:Abu_0380 biopolymer transport protein ExbD.
 
 
   0.705
Slin_2257
TIGRFAM: conserved repeat domain protein; KEGG: CH211-217K17.8; hypothetical LOC798921.
  
 
   0.701
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.