STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4873PFAM: cytochrome c class I; KEGG: azc:AZC_4146 hypothetical protein. (306 aa)    
Predicted Functional Partners:
Slin_4871
PFAM: Domain of unknown function DUF1791; KEGG: hypothetical protein; K09004 hypothetical protein.
 
   
 0.860
Slin_4874
KEGG: mxa:MXAN_4075 hypothetical protein.
       0.773
Slin_4875
PFAM: S23 ribosomal protein; KEGG: nam:NAMH_1676 S23 ribosomal.
     
 0.612
Slin_5670
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.576
Slin_3489
PFAM: Di-haem cytochrome c peroxidase; KEGG: scl:sce3211 hypothetical protein.
 
  
 0.530
Slin_4870
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: tcx:Tcr_1555 LysR family transcriptional regulator.
       0.487
Slin_4876
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1389 ABC transporter ATP-binding protein.
       0.418
Slin_3562
KEGG: mxa:MXAN_5541 cytochrome c oxidase, cbb3- type, subunit I/II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.417
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.