STRINGSTRING
Slin_4873 protein (Spirosoma linguale) - STRING interaction network
"Slin_4873" - Cytochrome C class I in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4873Cytochrome C class I (306 aa)    
Predicted Functional Partners:
Slin_4874
Hypothetical protein (1215 aa)
              0.859
Slin_4896
Cytochrome C class I (142 aa)
 
          0.813
Slin_4871
Hypothetical protein (151 aa)
 
          0.754
Slin_4875
S23 ribosomal protein (119 aa)
              0.669
Slin_0648
Cytochrome C family protein (332 aa)
 
            0.647
Slin_3036
TonB-dependent receptor plug (1033 aa)
   
          0.570
Slin_4870
LysR family transcriptional regulator (298 aa)
              0.542
Slin_3035
Hypothetical protein (533 aa)
   
          0.519
Slin_4876
ABC transporter (299 aa)
              0.469
Slin_4086
FAD linked oxidase (539 aa)
   
          0.451
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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