STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4915PFAM: protein of unknown function DUF1573; KEGG: gme:Gmet_1031 hypothetical protein. (150 aa)    
Predicted Functional Partners:
Slin_3521
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dds:Ddes_2085 TonB family protein.
  
     0.667
Slin_0475
Hypothetical protein.
  
     0.646
Slin_4451
KEGG: mxa:MXAN_6763 hypothetical protein.
  
     0.606
Slin_3227
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: AGAP008064-PA; K01719 uroporphyrinogen-III synthase.
  
     0.588
Slin_5189
N-acetylglucosamine kinase-like protein; KEGG: bph:Bphy_2984 ATPase BadF/BadG/BcrA/BcrD type.
  
     0.573
Slin_3522
TIGRFAM: TonB family protein; KEGG: mxa:MXAN_6485 ferric siderophore transporter, periplasmic energy transduction protein TonB.
  
     0.553
Slin_4064
KEGG: dal:Dalk_1888 ribosomal protein L17.
  
     0.545
Slin_4914
PFAM: Transketolase domain protein; dehydrogenase E1 component; Transketolase central region; KEGG: hypothetical protein.
       0.533
Slin_1298
Hypothetical protein.
  
     0.528
Slin_1307
TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: scl:sce3596 hypothetical protein.
  
     0.521
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.