STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4966PFAM: protein of unknown function DUF58; KEGG: mxa:MXAN_2474 hypothetical protein. (450 aa)    
Predicted Functional Partners:
Slin_4959
PFAM: protein of unknown function DUF95 transmembrane; KEGG: hch:HCH_00262 uncharacterized membrane protein.
 
  
 0.860
Slin_4962
KEGG: hypothetical protein.
 
    0.856
Slin_4961
KEGG: mxa:MXAN_2477 hypothetical protein.
 
     0.843
Slin_4958
PFAM: RDD domain containing protein; KEGG: psa:PST_1159 hypothetical protein.
 
    0.841
Slin_4960
KEGG: pmy:Pmen_3315 hypothetical protein.
 
     0.826
Slin_4963
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mxa:MXAN_2475 putative transcriptional regulator.
  
 0.784
Slin_4965
Hypothetical protein; KEGG: rpd:RPD_2468 peptidase C14, caspase catalytic subunit P20.
  
    0.490
Slin_4964
Hypothetical protein.
       0.457
Slin_2866
KEGG: pst:PSPTO_5290 hypothetical protein.
  
     0.403
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.