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rlmN protein (Spirosoma linguale) - STRING interaction network
"rlmN" - Radical SAM enzyme, Cfr family in Spirosoma linguale
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rlmNRadical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs (349 aa)    
Predicted Functional Partners:
Slin_2843
Oxygen-independent coproporphyrinogen III oxidase (374 aa)
 
   
  0.772
Slin_4987
Hypothetical protein (296 aa)
              0.709
queA
S-adenosylmethionine/ tRNA-ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (347 aa)
 
   
  0.698
Slin_1101
Queuosine biosynthesis protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (409 aa)
 
   
  0.675
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (708 aa)
 
      0.664
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another (186 aa)
 
        0.634
Slin_4420
RNA-binding S4 domain-containing protein (638 aa)
 
      0.622
miaB
MiaB family RNA modification protein; Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine (513 aa)
 
   
  0.621
rimO
MiaB-like tRNA modifying protein YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 (437 aa)
 
   
  0.606
Slin_1116
Alanine racemase domain-containing protein (219 aa)
   
        0.597
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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